EncFS is a Free (LGPL) FUSE-based cryptographic filesystem. It transparently encrypts files, using an arbitrary directory as storage for the encrypted files. Developed by arg0.net
License: Open Source
EncFS provides a file-based encryption solution with cross-platform compatibility and easy setup, while Cryptonite offers strong AES encryption with a focus on cloud integration and user experience. Both have their pros and cons, with EncFS being more flexible and Cryptonite excelling in usability and cloud integration.