JabRef is a reference management software that uses BibTeX and BibLaTeX as its native formats and is therefore typically used for LaTeX.

BibDesk is an open-source reference management software package for macOS, used to manage bibliographies and references when writing essays and articles.

ReadCube is a desktop and browser-based program for managing, annotating, and accessing academic research articles.

colwiz (collective wizdom) is free web, desktop and mobile based research management software.